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Cell Modeling Tool Makes Complex Calculations User-Friendly（图）
Cell Modeling Tool Complex Calculations User-Friendly
2017/10/25
Programming a molecular biology experiment can be similar to playing Sudoku; both are simple if you’re working with only a few molecules or a small grid, but they explode in complexity as they grow. N...
Modeling the dose effects of soybean oil in salad dressing on carotenoid and fat-soluble vitamin bioavailability in salad vegetables
bioavailability carotenoid concordance lipid triglyceride vitamin A vitamin E vitamin K
2018/11/16
Background: Previously, we showed that vegetable oil is necessary for carotenoid absorption from salad vegetables. Research is needed to better define the dose effect and its interindividual variation...
Fundamentals of GIS for ecology and species distribution modeling workshop
Fundamentals of GIS for ecology and species distribution modeling workshop
2017/3/10
GIS skills are essential to modern day ecologists. No matter what their specialism ecologists have had to acknowledge that species, and ecological phenomena occur in the real world, and that the relat...
Single-Cell Biophysics: Measurement, Modulation, and Modeling
Single-Cell Biophysics Measurement
2016/7/28
Biophysical studies in individual living cells enable a quantitative understanding of the structures and dynamics of macromolecules and cellular processes in their own physiological context. This is a...
Ram Vanam M.S., Indiana University, December 2004. Electrostatic modeling of protein aggregation. Research Advisor: Paul L. Dubin Electrostatic modeling was done with Delphi of insight II to explain a...
Steady-state parameter sensitivity in stochastic modeling via trajectory reweighting
Steady-state parameter sensitivity stochastic modeling trajectory reweighting
2012/2/28
Parameter sensitivity analysis is a powerful tool in the building and analysis of biochemical network models. For stochastic simulations, parameter sensitivity analysis can be computationally expensiv...
Edge-based compartmental modeling for epidemic spread Part II: Model Selection and Hierarchies
epidemic spread Model Selection and Hierarchies Part II
2011/9/29
We consider the edge-based compartmental models for epidemic spread developed in [5]. We show conditions under which simpler models may be substituted for more detailed models, and in so doing we de n...
Edge-Based Compartmental Modeling for Infectious Disease Spread Part I: An Overview
Infectious Disease Spread
2011/9/29
The primary tool for predicting infectious disease spread and intervention e ectiveness is the mass action Susceptible-Infected-Recovered model of Kermack and McKendrick . Its usefulness derives large...
Edge-Based Compartmental Modeling for Infectious Disease Spread Part III: Disease and Population Structure
Infectious Disease Part III Disease and Population Structure
2011/9/29
We consider the edge-based compartmental models for infectious disease spread introduced in .These models allow us to consider standard SIR diseases spreading in random populations. In this paper we s...
Modeling the Q-cycle mechanism of transmembrane energy conversion
Q-cycle transmembrane energy conversion
2011/9/9
The Q-cycle mechanism plays an important role in the conversion of the redox energy into the energy of the proton electrochemical gradient across the biomembrane. The bifurcated electron transfer reac...
Modeling branching effects on source-sink relationships of the cotton plant
Modeling branching source-sink the cotton plant
2011/1/6
Compared with classical process-based models, the functional-structural plant models provide more efficient tools to explore the impact of changes in plant structures on plant functioning. In this pap...
Preliminary Functional-Structural Modeling on Poplar
Preliminary Functional-Structural Modeling Poplar
2011/1/6
Poplar is one of the best fast-growing trees in the world, widely used for windbreak and wood product. Although architecture of poplar has direct impact on its applications, it has not been descried i...
Modeling of the gap junction of pancreatic β-cells and the robustness of insulin secretion
pancreatic β-cells gap junctions synchronization robustness
2010/12/2
Pancreatic β-cells are interconnected by gap junctions, which allow small molecules to pass from cell to cell. In spite of the importance of the gap junctions in cellular communication, modeling studi...
Molecular modeling of the HAMP domain of sensory rhodopsin II transducer from Natronomonas pharaonis
Molecular dynamics simulation Coiled-coil Signal transduction Homology model Af1503
2010/12/2
The halobacterial transducer of sensory rhodopsin II (HtrII) is a photosignal transducer associated with phototaxis in extreme halophiles. The HAMP domain, a linker domain in HtrII, is considered to p...
X-ray fiber diffraction modeling of structural changes of the thin filament upon activation of live vertebrate skeletal muscles
Thin filament Ca2+-regulation skeletal muscle X-ray fiber diffraction
2010/12/2
In order to clarify the structural changes of the thin filaments related to the regulation mechanism in skeletal muscle contraction, the intensities of thin filament-based reflections in the X-ray fib...